rs48141164 SNP Detail

Summary

• ID
  rs48141164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48123278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACAAAC AAACAAGATC
  ATCCCATCAA AAAGTTTCTC CTGGCTCAGG ACATAGCATT GAGGCAAGAA TCCTAGGAGA
  TGAGACAGAG TCAGTGCCAA GATGATCCTT AGCCACTGTG AAACCAATGC TGATCCTAAT
  AGAAACACTC AAGTTCAAAG GCAAAGGAGG GATGAAGGAG TGATGAGGCT GAAGAAAACA
  R
  GCCTACAGGG ATGGAGATGG TAAGTGAGGT GACATCTGTG AAGGGATTGT TCTTTGCACA
  GCGTCATAGG ATGAAGTGTT GAGAAGATCT GTCAGGAATG TGCTGGAAAG GGGCATAGCA
  CAGCTGAGAC TGTTCTGTGA CCACTGGTAA GGCAGTTATA GCATTAGACC ATAATATCAG
  TTGGGGGTGG GTGGGTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60455100	NES16441075	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48141164					SNP	G	G	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60455100	NES16441075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48123278 () rs orientation: forward

Symbol	Name	Function Class
Tssr138650	transcription start site region 138650	948 bp upstream
Tssr138651	transcription start site region 138651	999 bp upstream