rs48141210 SNP Detail

Summary

• ID
  rs48141210
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACCCCA AGGTGACCTA
  GACACGAGTC CACTCTCACA GTCACTTCCA TAGTGATTTC TGGAGCAGGC CACCAAGGCA
  CACCACGATA GCAGTTTGGT CTAGGAAAGT CAAGGGGGCT CACGAGGTTG AGGCAGCTAG
  ACAAACAGCT CAAGGCCAAG AGCAAAGGGA GATAGCTGGT GGGAATACCC TGCCAGGGAT
  T
  CCTGCCACAC CAGGCAGCCA GAGACCCAGT TCAACCAGGG AAATACAGTT CACAAAGTAT
  TTTTATCCAT GGAAATAAAT CAGAAAACAA AACTAGCCTC AGCATTTGGA AAGGAGGATC
  AGGAACTCAT GGTTACCTTG ACTATCCAAG GAGTCCAAGG TCAGCCCAAG CTATGCAAGA
  CTGCCTCAAA AACCAAATAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144899267	ENSMUSSNP855900	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48141210					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192184 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	356 bp downstream