rs48142086 SNP Detail

Summary

• ID
  rs48142086
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7503804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCTGT CTCAGAGAAA
  AAAAAAAGCC AGAGCTCACA TGATGCAGAG ATAACATGCC AGCACCTGGG CAGGGGAGGA
  AAAAGGATAA GCTGAGGATA AGGTCATCCT CAGCTGCCTG GGAAAGGCAT GGCCAGCCTC
  AGGCTAAGTG AAATCCTATC TCAAATATAC AGCCGGGCAA TGGTGGCCCA CGCCTTTAGT
  C
  CCAGCACTTG GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGGCTACCA
  AGTAAGTTCC AGGACAGCCA GGGATACACA GAAAAAAACC GGCCTCAAAA AAAAAAAAGA
  AAGAAACAAA CAAACAAACA AATAAATGGT ATCCAGTCAA ATGTTTCCAA ATTCAAGCAA
  CAGAAGGGTA TAAAATGGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134083443	ENSMUSSNP1651499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48142086					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7503804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	963 bp proximal
Rr689617	regulatory region 689617	584 bp proximal
Rr689618	regulatory region 689618	917 bp proximal
Syp	synaptophysin	1015 bp upstream
Tssr160397	transcription start site region 160397	1109 bp upstream