rs48142397 SNP Detail

Summary

• ID
  rs48142397
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102248736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGGGTA AGACTAGACT
  GGCCAGGAAC AGGTGGAGTT CAACCCACTG CATCCAAATA GTGAATCTAA AGTCAAGCCA
  GTCCAGGGTG GGAAACCTGG CCTCTTCTGT CCTCCCACAA GCTCCCTGGG GATAAAACCT
  GACCTCTTCT GTCCACAAGC TCCTTGGCTA ACCAGCCACA TCTCCCTCCA TCCCCCCAGC
  S
  CTCCACACTC ACTCTTTCTG TCATGAGAGT TGCTGCAGCC CTGCCCAGCT GGGTATAGTC
  GACATGCGGA GCCTCAGGTC CCAGCAGAAC AAGAAGGAAG CCCACAGGCT CTGGCAACAC
  CAGGTCCTCC AGAGGCACGG CCTCCTTCAG TCTCACGAAG CCCAGTACAG GCTTCTCCAG
  AAAATTAGCC CGGCCTGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132735938	ENSMUSSNP4047849	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48142397					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102248736 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	1768 bp upstream
Tssr111050	transcription start site region 111050	1718 bp upstream
Tssr111051	transcription start site region 111051	1670 bp upstream
Tssr111052	transcription start site region 111052	1460 bp upstream
Tssr111053	transcription start site region 111053	1404 bp upstream
Tssr111054	transcription start site region 111054	1071 bp upstream
Tssr111055	transcription start site region 111055	999 bp upstream
Tssr111056	transcription start site region 111056	814 bp upstream
Tssr111057	transcription start site region 111057	738 bp upstream
Tssr111058	transcription start site region 111058	567 bp downstream