rs48142725 SNP Detail

Summary

• ID
  rs48142725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGACTCG GAAGGAGAGT TTCTGGTTTC TTCCAGGCTC
  CACACGGCCT TGATCTAGAA TGTTCCTGAC ATCTAGCTAT GTGTCTGCCC TTGGCTTAGA
  W
  TTCCTCTTTT TGCGGGGCTA GTTCCACAGG TTTCTCTTAC TTTCCTATGA GAAAGAGCTG
  TCGAGAGCTG GAAAAATACT CCGGGGTCAG GGTAGTTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147744261	ENSMUSSNP7209254	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321390084	CHEV_4_141375623	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48142725					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547019 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	631 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	143 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1809 bp downstream
Tssr40106	transcription start site region 40106	1778 bp downstream
Tssr40107	transcription start site region 40107	1726 bp downstream
Tssr40108	transcription start site region 40108	664 bp downstream
Tssr40109	transcription start site region 40109	629 bp downstream
Tssr40110	transcription start site region 40110	606 bp downstream
Tssr40111	transcription start site region 40111	1617 bp upstream
Tssr40112	transcription start site region 40112	1645 bp upstream
Tssr40113	transcription start site region 40113	1674 bp upstream
Tssr40114	transcription start site region 40114	1996 bp upstream
Tssr44369	transcription start site region 44369	1811 bp upstream
Tssr44370	transcription start site region 44370	1771 bp upstream
Tssr44371	transcription start site region 44371	1740 bp upstream
Tssr44372	transcription start site region 44372	1709 bp upstream
Tssr44373	transcription start site region 44373	1422 bp upstream
Tssr44374	transcription start site region 44374	576 bp upstream
Tssr44375	transcription start site region 44375	343 bp upstream
Tssr44376	transcription start site region 44376	325 bp upstream
Tssr44377	transcription start site region 44377	276 bp downstream
Tssr44378	transcription start site region 44378	395 bp downstream
Tssr44379	transcription start site region 44379	1644 bp downstream
Tssr44380	transcription start site region 44380	1656 bp downstream