rs48145152 SNP Detail

Summary

• ID
  rs48145152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCCTGG AACCTTTCCT
  GAGATTCTGG TGAGTCGGTC AGCTCTGTGG GACTCTCTCT TCTTTTCTAA ACATCTAGAA
  CAGTTATAGT ACAGCTACTT CTGTTGAGCT CTCCCTGCTC TCTCCAGAAT ATGTCCTTTC
  CCTCACAGCC ACCCAAGAGC TCAGGGATCT CATCTTTGCT CTTTCCCTCC AGCCCCAGGA
  Y
  GCCAACTTTG AATAGGATGA AGACTACAAC TTGTTCCCTT CTCATCTGCA TCTCCCTGCT
  CCAGCTGATG GTCCCAGTGA ATACTGATGA GACCATAGAG ATTATCGTGG AGAATAAGGT
  CAAGGAACTT CTTGCCAATC CAGGTATGAA TGAATAGGAG AACTCATAGC TTAATTGTGC
  TGATGCTGAC TGTACATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458788	NES16437364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48145152					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458788	NES16437364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663163 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	313 bp downstream
Tssr138681	transcription start site region 138681	220 bp downstream
Tssr138682	transcription start site region 138682	169 bp downstream
Tssr138683	transcription start site region 138683	139 bp downstream
Tssr138684	transcription start site region 138684	105 bp downstream
Tssr138685	transcription start site region 138685	64 bp downstream
Tssr138686	transcription start site region 138686	43 bp upstream
Tssr138687	transcription start site region 138687	84 bp upstream
Tssr138688	transcription start site region 138688	743 bp upstream
Tssr138689	transcription start site region 138689	1371 bp upstream
Tssr138690	transcription start site region 138690	1429 bp upstream
Tssr138691	transcription start site region 138691	1466 bp upstream