rs48145474 SNP Detail

Summary

• ID
  rs48145474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTGATT TAAAAACTAA
  CCGTGATAAA CCAAATACAT GTTGACACAA ACAACACTTT TACAAAAACT ATTTACAACA
  TAAACCAAAA ATCAGTTGGA AGTAAAACAT TGTTTTACCT TTTTACAAAG TTCTTACGGT
  TAGTGATGTG CTGTTGTGGG TGACAAACAA GAGGCTGCGT TGGGGGCCTT GGAGAGGCTG
  R
  GCCAAAGATG GTAACAGGAG TTCTTCCAGA GAGATGACAC ACTGACTGAA AGATCTCTGA
  TGGGATGGGT TTCCCCACAG ACTACCCGGG AAACAGCATT CCGAGCCCCC ACCACCCTAA
  ATTCAAAGTC TCTGAGGCAG GAAGACCTGT GTAGGTTTTT AAGGAGCAGA GACAAGGTAG
  GTTAATAAGG GCGTGATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148805323	ENSMUSSNP1598847	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322156687	CHEV_7_36017718	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48145474					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1860 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Rr645337	regulatory region 645337	230 bp proximal
Rr645338	regulatory region 645338	1056 bp proximal
Rr645339	regulatory region 645339	1932 bp proximal
Rr645340	regulatory region 645340	1994 bp proximal