rs48145948 SNP Detail

Summary

• ID
  rs48145948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACTCA CCTGCTCACT
  GACCTGCGCC AGCAGCAGCA CCCAGAGCGC AGCACAACCT CGGGACTCCA TGGCCCCGGT
  GCCCGAGGGC TCACAGGACT CAGCTCAGCA GTCTAGACTG GGTCACTGGA TAGTCCCGGT
  GTTAGCAGTA TGCTAGGGTG CAAAGGACCG ACCCGGCAAA ATCGCAGGGT TTCCAGGCAG
  S
  GATTCCACCA TGCACATCAG AGTTATCACT GCAGCTTCGT TCGGCACCGG GAGGTGGAGT
  GGCAGTGGTG GCGGGGGGCG GCAAAGCACC CGCAGCAACC AAGGGACAGC AGGGAGGAGG
  GTAGAGAAGG AGAGGGCAGG ACTAGGGAGG GCAAAGGAGA GGAGAGGGGA GGGGATAGAG
  GAGGGAGTAA AGCAGGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651862	NES15472158	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C	G		C
ss324417475	CHEV_13_70980557	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48145948					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651862	NES15472158	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989798 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1524 bp distal
Rr482299	regulatory region 482299	1219 bp distal
Rr482300	regulatory region 482300	1292 bp distal
Rr482301	regulatory region 482301	1019 bp distal
Rr482302	regulatory region 482302	969 bp distal
Rr482303	regulatory region 482303	43 bp proximal
Rr482304	regulatory region 482304	122 bp proximal
Tssr123158	transcription start site region 123158	24 bp downstream
Tssr123159	transcription start site region 123159	50 bp downstream
Tssr123160	transcription start site region 123160	83 bp downstream
Tssr123161	transcription start site region 123161	111 bp downstream