rs48146267 SNP Detail

Summary

• ID
  rs48146267
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12217094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCACGG TGAGAAGTCT
  TGGACTAACC ATCCCCAGTT CAGCTTGGTG TCTTCTGAGG TCAGCCTGTC AAGTTTCTGT
  CAGTCGACTC TTCCCCTCAT CGTCCATAAG CAAAGCAGTC ACGGCCTCCA GAGCACCGTT
  TGTGGGAGCT CCTTGACAGC GTCTTCGTTT CTATTACCAC CTTCCTCCGC TAGAACCCTT
  M
  TTATGCTTCC TGTCTGCACT GCCTCGAGAT CTCTGCACGA CCCAGCAGAG GGGCCCTGTC
  CAGTGCGCTT CCATTTCTCC ACCTCAGACC TCATCATGCA GCCCTTCTGC TCTCTGAGAA
  CGCCATTTGC CTGTGGTTTT GTTAAGAAAG CCTGAGCTTG GCCGGGACTG TGGACATTTC
  TTTTCTGTGT GACCCACAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52532037	NES15597972	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	C	A	A	A	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48146267					SNP	C	A	A	A	C	A	C	A	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52532037	NES15597972	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12217094 () rs orientation: forward

Symbol	Name	Function Class
D15Mit1005	DNA segment, Chr 15, Massachusetts Institute of Technology 1005	1310 bp proximal
D15Mit1006	DNA segment, Chr 15, Massachusetts Institute of Technology 1006	1174 bp proximal
Mtmr12	myotubularin related protein 12	within coordinates
Tssr130728	transcription start site region 130728	1789 bp downstream