rs48146623 SNP Detail

Summary

• ID
  rs48146623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36899942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC TGGTTTGCTC AGCTCAGCAG
  R
  TGGAGAGGGG CTGATTTGTT CTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146951411	ENSMUSSNP3519398	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325584897	CHEV_18_36926543	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48146623					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36899942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	1312 bp distal
Dnd1	DND microRNA-mediated repression inhibitor 1	675 bp upstream
Gm58557	predicted gene, 58557	within coordinates
Hars1	histidyl-tRNA synthetase 1	within coordinates
Rr352751	regulatory region 352751	1341 bp distal
Tssr152972	transcription start site region 152972	684 bp upstream
Tssr152973	transcription start site region 152973	652 bp upstream