rs48147417 SNP Detail

Summary

• ID
  rs48147417
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146791527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCCTC TACCTTAACG
  CTTATTTTTC AAGATGAATG GCAAAGAGAG TCTTCTTCTC TGGGCCCTTC TGTTTTCCCT
  GACCTGGGAG ATATTTGAAT AGTCCCAGCA GTGAGAATGC TTTTCATGAA GAAAGGGCAA
  TACTCTAACC CCAGGGCAAG CAGGAAGCTT TTCCAAGGAG GAAGCATGTG TGTTAGCTAT
  K
  TCCCCATATA CCTTAAAACT AACTTTTCTT TCTGTAAAAG AAAAAACTAA GAAAAGAGAT
  TTGGCTATGG AACTTTACCT GCTCCCTAAA ACCGGCTGCA GTTTGATAGA TGTTGCTGTT
  GCTAACACTG TCAGTTCAAG AATGTGCAAG AGGCAGCCAT GTGACTAGCC GGTATGTACT
  ATAGAATGAG AGTCATTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096450	NES16601024	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48147417					SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096450	NES16601024	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146791527 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr587120	regulatory region 587120	1984 bp distal
Rr587121	regulatory region 587121	742 bp distal