rs48149061 SNP Detail

Summary

• ID
  rs48149061
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39302514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAACTTT TCTATTTGAC
  TTTCTGATTC CACATAAGTA AGGCGTCACA AGTGTGTTTT CTGTGAGATG ACTTTCCAAT
  ACCTAGAAAA TTTTTGAAGT GGCCATTCTG AAATCCAAGG TTTGTGTGAA ATAATAGTTA
  CATTAGCTTC TGTATCCACC ACATCTTCTA TTTAAGTATC ATAGCAAATT TAATTTTGGA
  K
  TCTGATGATT AACATCTGTT TTCAAGGACA TATATTTTCC TGAATTTCAA AATTCTTCTG
  ATCTTTCAAC TGGAACGGCT TTATCTCTGA TATAGGGAAA CAGAAACAGT TGAGCAATTC
  CATCACCAGT GTTAAATTGC ATATCTTAAA AAAAAAAAAA AACTTAGGCC ATTTTTCAAT
  TTCTCCCTTG AAATCTCCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312167	NES15803714	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48149061					SNP	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312167	NES15803714	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39302514 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1410 bp upstream
Tssr156338	transcription start site region 156338	1444 bp upstream
Tssr156339	transcription start site region 156339	1469 bp upstream
Tssr156340	transcription start site region 156340	1569 bp upstream
Tssr156341	transcription start site region 156341	1618 bp upstream