rs48149178 SNP Detail

Summary

• ID
  rs48149178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128359312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTCTTC CCTCCCTCTC
  CCCCACCACA TTTTGTTGTT GTTGTTGTTG TTCTGACGAC TTATTTTATG TACATCGGTG
  TTTTGCTTGC ATGTATGTCT GTGTGAAAGT ATCAGATCCC TTGGATCTCG CAGTGTGAGC
  TGCCATGAGG GTGCTGAACC CAGGACCTCC GGAAGAGTAG AGTCAGTGAG TGCCCTTAAC
  M
  AGCGATCCAT CTTTCTACCT CTCCCCCACA TGCACGCTTT TTTTGTTTTA ATGACTTATA
  TGCATTGGTG TCTTGCCTAC ATGTATGTCT GTATGAAGGT GTCAGATCCC TTGATTCTAG
  AGTTACAGGC AATGTGAGTT GCCATGTGGG TGCTAGGAAT TGAACCCAGG TCCTCTGGAA
  GAGTAGTCAT TGCTTTTAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147740692	ENSMUSSNP5725105	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		A
ss323534399	CHEV_10_127960499	CHEVERUD	SCREENING_POP	f	SNP				C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48149178					SNP	C	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128359312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2406	CpG island 2406	1263 bp proximal
Esyt1	extended synaptotagmin-like protein 1	within coordinates
Gm29585	predicted gene 29585	within coordinates
Rr224467	regulatory region 224467	488 bp proximal
Rr369107	regulatory region 369107	1509 bp upstream
Rr369108	regulatory region 369108	1863 bp upstream
Tssr99886	transcription start site region 99886	963 bp upstream