rs48149920 SNP Detail

Summary

• ID
  rs48149920
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101006283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GGCTGAGGTC GGAGGATGGC
  G
  TGTGTGATGA CAATCTGGGC TACAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148929807	ENSMUSSNP5521922	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321627724	CHEV_5_101287436	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48149920					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101006283 () rs orientation: forward

Symbol	Name	Function Class
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr399195	regulatory region 399195	1524 bp downstream
Rr615577	regulatory region 615577	1405 bp distal
Rr615578	regulatory region 615578	1972 bp proximal