rs48150402 SNP Detail

Summary

• ID
  rs48150402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:27132969 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T TAGCTTTTAC AATCTTGCTG AATTCTAAAC CCTTGATCTT
  GGTCTAGGAT GCCCTTGGAC TGTTGGAACA CTGGCGGAAG GCTTTAGCCA TGTCAGAGCA
  Y
  TTATAATAGG AAAATACTGA AAGAGAGCAC ATGGATCCAT ACTCTAGACT AGCGTGGTAC
  TGGAACTCGG GAATGAAAAA TTAATGTATG GGTAGAGAAC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135310480	ENSMUSSNP2679048	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss147836680	ENSMUSSNP7008962	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48150402					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:27132969 () rs orientation: reverse

Symbol	Name	Function Class
Rr376259	regulatory region 376259	within coordinates