rs48151055 SNP Detail

Summary

• ID
  rs48151055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTA CCCTCCCGTT GAGTTCCGAA
  R
  CAAGCCAAGG TTAAAGCCAC TGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61262554	NES16880308	PERLEGEN	MM_PANEL2	f	SNP	G			A	G	G	G	A	G		G	A	G	G		G
ss146998885	ENSMUSSNP3017296	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G
ss323275265	CHEV_10_24635479	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48151055					SNP	G	G	A	A	G	G	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262554	NES16880308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791571 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Coding-Synonymous
Tssr92746	transcription start site region 92746	36 bp downstream
Tssr92747	transcription start site region 92747	20 bp upstream
Tssr97085	transcription start site region 97085	180 bp upstream
Tssr97086	transcription start site region 97086	118 bp upstream
Tssr97087	transcription start site region 97087	92 bp upstream
Tssr97088	transcription start site region 97088	32 bp upstream
Tssr97089	transcription start site region 97089	17 bp upstream
Tssr97090	transcription start site region 97090	7 bp downstream
Tssr97091	transcription start site region 97091	398 bp downstream
Tssr97092	transcription start site region 97092	418 bp downstream
Tssr97093	transcription start site region 97093	442 bp downstream
Tssr97094	transcription start site region 97094	458 bp downstream
Tssr97095	transcription start site region 97095	472 bp downstream
Tssr97096	transcription start site region 97096	737 bp downstream
Tssr97097	transcription start site region 97097	1011 bp downstream
Tssr97098	transcription start site region 97098	1159 bp downstream