rs48151751 SNP Detail

Summary

• ID
  rs48151751
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42311710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGA CCGGGAGGAG AAGGGTTTCA
  C
  GAACCAATCT TCCTCCCTAC ACCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132042366	ENSMUSSNP1709815	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323647642	CHEV_11_42234385	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48151751					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42311710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	380 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	1116 bp distal
Rr445406	regulatory region 445406	within coordinates
Tssr100974	transcription start site region 100974	1164 bp downstream
Tssr100975	transcription start site region 100975	1098 bp downstream
Tssr100976	transcription start site region 100976	928 bp downstream
Tssr100977	transcription start site region 100977	440 bp downstream
Tssr100978	transcription start site region 100978	104 bp downstream
Tssr100979	transcription start site region 100979	28 bp downstream
Tssr100980	transcription start site region 100980	350 bp upstream
Tssr100981	transcription start site region 100981	375 bp upstream
Tssr100982	transcription start site region 100982	402 bp upstream
Tssr100983	transcription start site region 100983	439 bp upstream