rs48152223 SNP Detail

Summary

• ID
  rs48152223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT TATAGGAAAT AGAACATTAT
  R
  TTAGATTTAA CTCTTAAAAC CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61442852	NES16830269	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G		A
ss136830319	ENSMUSSNP3073953	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss323107372	CHEV_9_96161083	CHEVERUD	SCREENING_POP	f	SNP							A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs48152223					SNP	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442852	NES16830269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142717 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1430 bp downstream
Tssr86589	transcription start site region 86589	1953 bp downstream
Tssr86590	transcription start site region 86590	1938 bp downstream
Tssr86591	transcription start site region 86591	1879 bp downstream
Tssr86592	transcription start site region 86592	1862 bp downstream
Tssr86593	transcription start site region 86593	1834 bp downstream
Tssr86594	transcription start site region 86594	1651 bp downstream
Tssr86595	transcription start site region 86595	1403 bp downstream
Tssr86596	transcription start site region 86596	1387 bp downstream