rs48152565 SNP Detail

Summary

• ID
  rs48152565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96190446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGAAGG ACGCGGCCTG
  CGCTCTCTCC GGCGCCGACG AGCCGCCCCC GTTCCACCCC GAGCCGCGCA AGTCCGACTG
  CGCACAGGAC AAGAGCGTGT TCGGAGAGAC CGAGGAGCAG AAGTGCTCCA CGCCCGTCTA
  CCCGTGGATG CAGCGCATGA ATTCGTGCAA CAGTGAGTGA GACTTCCCGC TGTCCCGTGT
  S
  TGTGTGTGTG TGTGTGTGGG GGGGGGTCGG CAAGCAGAAA GACTGAAAGT GTCAGCATCC
  CCCAACCCCA ATTCTCCCAT TGGGAACTAG GTGGGCATCT CAGCAGATAG AGCAAGATTG
  CCCCCCCCCC CGACCTCCAG ATCAGTCCTC TTGCCCGCAG AAGTTGCAAA GTTTGCAAAG
  TCCCAGCTGC ACAGTAAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384366437	MGP_WTSI_11_96160934	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48152565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366437	MGP_WTSI_11_96160934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96190446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	within coordinates
Cpgi3642	CpG island 3642	927 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	439 bp distal
Rr455362	regulatory region 455362	884 bp proximal
Tssr3658	transcription start site region 3658	355 bp downstream
Tssr104480	transcription start site region 104480	850 bp downstream
Tssr104481	transcription start site region 104481	822 bp downstream
Tssr104482	transcription start site region 104482	799 bp downstream
Tssr104483	transcription start site region 104483	537 bp downstream
Tssr104484	transcription start site region 104484	518 bp downstream
Tssr104485	transcription start site region 104485	491 bp downstream
Tssr104486	transcription start site region 104486	472 bp downstream
Tssr104487	transcription start site region 104487	398 bp downstream
Tssr104488	transcription start site region 104488	368 bp downstream