rs48153595 SNP Detail

Summary

• ID
  rs48153595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29688614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTACCAG GCGGATGAGG
  TTCCTGATCC CTTAGCGTTT ACTAATGAAG AGTGACAACA CTAAATAATC AGGTTAGTAA
  TTCCATGTTG TGATAAGGAC TATGAATAAA CTGACCAGAG ATGAGGAATC AAGGAGAGAC
  ACTCAAATGA TGACACTCGG GCTGACAACT GAAGGGGAAA GGATGGGGAA CTGTCGGTGA
  R
  TCAGTTAACG TGTTACAGGA AGAATAGCTA TGTGCACGTT CAGGGAGATG AAAAGACTTA
  GGGCACTCAC AAAACTGTAA AAAAAAAAAA AAAATTATTG CCAGAGTGTG TTTTGGGTGG
  GAATGTGTAG CAGAAGCTAA AATCAAGTGA ACAGGTCAGG CTATATCAGT GGATACTGAA
  AAGGACCTAG TTTGTAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62190382	NES17192733	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48153595					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62190382	NES17192733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29688614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6266	CpG island 6266	1390 bp proximal
Gm47414	predicted gene, 47414	within coordinates
Rr369802	regulatory region 369802	1412 bp upstream
Rr369803	regulatory region 369803	1534 bp upstream
Rr489727	regulatory region 489727	1161 bp proximal
Rr489728	regulatory region 489728	1662 bp proximal
Selenok	selenoprotein K	1723 bp upstream
Tssr124803	transcription start site region 124803	1660 bp upstream
Tssr124804	transcription start site region 124804	1693 bp upstream
Tssr124805	transcription start site region 124805	1712 bp upstream
Tssr127829	transcription start site region 127829	1501 bp downstream