rs48153744 SNP Detail

Summary

• ID
  rs48153744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTCTATA CCAGGTCCCT TTGGAATAGG AACAAAGGAA
  TCCACAGTAC AGATGAATAA ACTGTGTAGC TCAAGGGCCA TTAGCAACTT TCAAGAAGCA
  Y
  CCCACTAGTG ATTGGCAAAA TCATGAATAA AGCCCTATAC CTAGTAGGCC TATGCTGTAA
  TGGCCCACTA CTAGCCTCCT GGTGCTGCAT CTTTCAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133020581	ENSMUSSNP4047863	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321756031	CHEV_6_17641650	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48153744					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691649 () rs orientation: forward

Symbol	Name	Function Class
Gm55211	predicted gene, 55211	1776 bp upstream
Rr626833	regulatory region 626833	553 bp proximal
Rr626834	regulatory region 626834	1927 bp proximal
St7	suppression of tumorigenicity 7	1930 bp upstream
Tssr55085	transcription start site region 55085	1957 bp upstream