rs48154786 SNP Detail

Summary

• ID
  rs48154786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85326721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGC CAGACTCCAG GGGACAGCTA
  Y
  GAGAGGCCTG GGGGAGCCAA AAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60644349	NES16270690	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss145390172	ENSMUSSNP3475347	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						T
ss322750927	CHEV_8_87123991	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48154786					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644349	NES16270690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85326721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Intron
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			489 bp proximal
Cpgi20698	CpG island 20698			1457 bp proximal
Gm64375	predicted gene, 64375			within coordinates
Rr666538	regulatory region 666538			147 bp proximal
Rr666539	regulatory region 666539			1903 bp proximal
Tssr78406	transcription start site region 78406			1268 bp upstream
Tssr78407	transcription start site region 78407			1328 bp upstream
Tssr78408	transcription start site region 78408			1371 bp upstream