rs48154929 SNP Detail

Summary

• ID
  rs48154929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122295429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCAGGCA GAGACTCAGA
  GATGATGAGA AGAGACCAGC TCTGCCTGTG TTTTGATCAG GGCCGTGCAG GCTTCAGAGC
  TTAAGGGAAA GCATCCCTGT GGTGGAATAG CCCAGCCAAG ATACCTTGTT AGTCAGACTA
  ACAGGTGTCA GTGAGCACCC GTGCTCTGTC ACAAGAGGAA GGATGTAGCC ACTGGTCAGA
  R
  TCATATGTTA GAAAGGCCCT GTCACTCCCC AGGCATTGTG GAGTACTGGG TAACTAGGCT
  CCTACTGGGG ACAAAAAGCC AGGTTTGAGT GGGGTTTCCC AGCAGCCCAT GGTCTACTTG
  CTGATGTCAT GGGCTGCCTT ACAGTAAGCA GTGTTTGCTG GGGCACATTT GGACTCCCCA
  GAACTGCAGT CTTCATCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52524810	NES15586791	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48154929					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524810	NES15586791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122295429 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	within coordinates
Gm63496	predicted gene, 63496	740 bp downstream
Rr498317	regulatory region 498317	within coordinates
Rr498318	regulatory region 498318	37 bp proximal
Tssr127312	transcription start site region 127312	321 bp upstream
Tssr130315	transcription start site region 130315	45 bp downstream