rs48155597 SNP Detail

Summary

• ID
  rs48155597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18092208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTTCCTT CTGATTTTCA AAATGCACAG GATGTGGTTT
  AACTGTGTCA TCACAACTAG AGATTAAGAC AGAGCCCCTT GGAAATAAGG TACTGTACAG
  W
  CCCCTCAATC ATAGGTTCCT CACACTCCCA AGTTCATAAT AACCCGAGCT TCCTTTTTCA
  CTGTACTTTT CACCTTAGTG ATTGTTTTCT TATCCTCTGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60545760	NES16558025	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48155597					SNP	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545760	NES16558025	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18092208 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	1425 bp downstream
Rr340653	regulatory region 340653	within coordinates
Tssr5021	transcription start site region 5021	796 bp downstream
Tssr5022	transcription start site region 5022	773 bp downstream
Tssr5023	transcription start site region 5023	239 bp upstream
Tssr142818	transcription start site region 142818	17 bp upstream
Tssr142819	transcription start site region 142819	1793 bp upstream