rs48156933 SNP Detail

Summary

• ID
  rs48156933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10992113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTACTA GCACAACCAA
  AGCTATGTGT TGCCCACAAC ATCGTATAGA CTCAGTACAG CCACGGAGGC TTCCTCTAAG
  ACAAAAGGGG ACACTTTCAG GGTAGAGTCT CTGGCTGATC ACTTGAGCAG GGAAAAAAAA
  AGTGATTTCT AAGTTACTGA TCTTAGAAGG GGTCACTTTT CTGGGCATAT TTCCCACAAC
  R
  AAGTCCAAAA CAGATGAACA GAAAGAACTT GTTTCTGATT ACAGCATCAC TGATACATAT
  ATGGAGAGTA GAAGAGGTCT GATGCTCTCT AATTAAATGT CCCCAGCTTT CCCATTAGAG
  ATGCTGAACA TCCTAGGGCC ATGTATTAAA AAGCTTGATC ACCAGGTGGC GCTCTCTAGA
  GGAGCTGGAA TTCCTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741553	NES17678360	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A	A	A	G		G	G	A	G		A
ss324260891	CHEV_13_10941323	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48156933					SNP	A	G	A	G	A	A	A	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741553	NES17678360	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10992113 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	within coordinates
Rr278201	regulatory region 278201	within coordinates