rs48156980 SNP Detail

Summary

• ID
  rs48156980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28686225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATGCGG GAGGATGAGC
  GTGCCGGTTT CGCTTGTTCC CGGTAGTCGT CAGCGTTCGG CTCCGTTGGT GAAAATTCTC
  CGCTCCCCTA GTTGGAGACC TGGGCAGAGT GGTGGCGGCC GGACGGCCCT AGGAAAAAGA
  AAGAAAGCAG CTTCCTTCCC CACGAAGATG GGACGTTTCA AATGTTTCAT TAGTCCCCAG
  Y
  TTTCTCCGCG TTTCCTGCTA ACACAATGAA AGGGAATCAG CATGGTGGTG GCGCACGCCT
  GTAATCCCAG CACTCGGGAG GCAGAGGCAG GCGGATCTCT TGAGTTTGGG GCCAGCCTGG
  TCTACAAAGA GAGTTCTGGG ACAGACAGGG CTACGTATAC AAACCATGTA TCAAAAAATG
  AGGTACGGGG TTGGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52348201	NES15378175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48156980					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348201	NES15378175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28686225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	10 bp distal
Gm53713	predicted gene, 53713	within coordinates
Rps7	ribosomal protein S7	273 bp upstream
Rr255850	regulatory region 255850	1176 bp proximal
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	128 bp downstream
Tssr116014	transcription start site region 116014	986 bp upstream
Tssr116015	transcription start site region 116015	389 bp upstream
Tssr116016	transcription start site region 116016	361 bp upstream
Tssr116017	transcription start site region 116017	339 bp upstream
Tssr116018	transcription start site region 116018	321 bp upstream
Tssr116019	transcription start site region 116019	274 bp upstream