rs48157669 SNP Detail

Summary

• ID
  rs48157669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:60384470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTATGA ACCCCTCTAA
  AGGAGCATCT TTGCTGACAC CTGCCTTAGA TCAACTTCTC TGCATCACTC ATTCCATGGA
  GGTTTCATCC CCTTGGACCA GTCACATTTC CCTCTCAGTC TGTTAGTAGT CACTGACACA
  CTAACCACAT GCCCGGCCCT CCTACAGTCC ACAAGACACC GTAGAAACCG TATGTTAAAA
  Y
  CATTGAAATT GGTTTTTGGT TTTGTTGCAT TAGGGATGGG ACCCAAGTTC CCATCCCTAA
  TACGTTAGGG AAGAGTTATT CTCCCAGCCA TTGCAAGACC ACTTTTTTTT TTTTTTTGAG
  ACAGGGTTTC TCTGTAAAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGAG CAGCCTGGCC
  TCGAACTCAG AAATCCGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52501567	NES15579518	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48157669					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52501567	NES15579518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:60384470 () rs orientation: forward

Symbol	Name	Function Class
Rr389731	regulatory region 389731	1156 bp downstream
Rr389732	regulatory region 389732	1552 bp upstream