rs48157674 SNP Detail

Summary

• ID
  rs48157674
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGTAAC ACGCCCCTCC
  CTCCCCATAT CCTATGATCT GGGACCACAG TGCCAAAAGG AAAAGGGAAA CCTTGCATCT
  GCTGGCTCAG TGAGCTACTA GCTCTTGTAC TCTCCACCCG CCCCATTCCT TCTGCAGACT
  GAGACAGGGA CCATCCCAGG GACTCCTAAA GAGGTCTTAT AAAAGGCTTC TCTGTGAGGA
  C
  GCATGCTATG GCTCCCCTTT GCTCTAGTCG CTGTCTACAG CTAGTGTCTG CCTATCTCCT
  TTTCCTTCTA GTACCTTACA GGCCACTTTG AGATACCTGG ACTGGGTTCC ATCTAAAATT
  GGCCTTAAGC CCCTTTTCAC GGCTTCCTGT GGCTAGCTGC TAGGGCTGTT GAGAGGGCTC
  GGCTTGGTCT GTCACATCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144898751	ENSMUSSNP2471096	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48157674					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185783 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	818 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1049 bp upstream
Tssr7959	transcription start site region 7959	1071 bp upstream
Tssr7960	transcription start site region 7960	1086 bp upstream
Tssr7961	transcription start site region 7961	1133 bp upstream
Tssr7962	transcription start site region 7962	1287 bp upstream
Tssr7963	transcription start site region 7963	1315 bp upstream
Tssr7964	transcription start site region 7964	1330 bp upstream
Tssr7965	transcription start site region 7965	1366 bp upstream