rs48158075 SNP Detail

Summary

• ID
  rs48158075
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73954329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG AGAACTCTAT AGAGAGCCGG
  K
  GCGGTGCGAG CCAGGCTCGG ACCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss137890805	ENSMUSSNP4647093	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss324099225	CHEV_12_75008542	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48158075					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73954329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	within coordinates
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	within coordinates
Rr467872	regulatory region 467872	360 bp proximal
Rr467873	regulatory region 467873	415 bp proximal
Rr467874	regulatory region 467874	1659 bp proximal
Tssr113838	transcription start site region 113838	404 bp upstream
Tssr113839	transcription start site region 113839	419 bp upstream
Tssr113840	transcription start site region 113840	500 bp upstream
Tssr113841	transcription start site region 113841	605 bp upstream
Tssr113842	transcription start site region 113842	630 bp upstream
Tssr113843	transcription start site region 113843	820 bp upstream