rs48158081 SNP Detail

Summary

• ID
  rs48158081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCTTCC TAATGCTGGG
  ACCCGTTAAT ACAGCTCATT TCCTCATGCT GTGATGACTC CCAAGCATAA AATTATTTTC
  ATTGCTACTT TGTAACCGTA ATCTTGCCAC TGCTACGACT TTTAAATAAT TTTAAATATA
  AATATCTGAT ATACTGGATA TCTGATATGC AACCTGTCTA AAAGTGCTTT TGGATGCCCA
  R
  AGGGGTCGAG ACCCACAGAT TGAGAACCTG TGCTCTACGG TCTACTTCTC CAGATTTGGC
  TCTGCAAATA AGATAGCGAG CAACTGAATT CCTGGTTCCG TTGTCCTAGG GCACAGCACT
  GAGGAACTAC TGTGGACATT GGTTTGTTCT CATCTCCTTC CAACCTCACA GATTTGGGCC
  TTTAGAGGGA CTGGCTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147442927	ENSMUSSNP6467290	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48158081					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471674 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	Intron
Rr600280	regulatory region 600280	1922 bp distal
Rr600281	regulatory region 600281	799 bp distal
Rr600282	regulatory region 600282	562 bp distal
Rr600283	regulatory region 600283	658 bp proximal
Rr600284	regulatory region 600284	1963 bp proximal
Tssr43532	transcription start site region 43532	631 bp downstream
Tssr43533	transcription start site region 43533	640 bp downstream
Tssr43534	transcription start site region 43534	654 bp downstream