rs48159008 SNP Detail

Summary

• ID
  rs48159008
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45160603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGCCATCA TGTGGTTGCT GGGAATTGAA CTCAGGTCCT
  CTGGAGGAGC AGTCACAGCT CTTAACCGCT GAGCCATCTC ATCAGTCCTG AGGGTAATTT
  T
  AAAAAAAAAA AAAAAGATTT ATTTGCTTAT TTTACATATA CAAGTACACT ATAGCTGTCT
  TCAGACACAT CAGAAGAGAG CATCAGATCC CATTACAGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss149136099	ENSMUSSNP837340	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48159008					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45160603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	610 bp distal
D7Mit81	DNA segment, Chr 7, Massachusetts Institute of Technology 81	1363 bp proximal
Gm45478	predicted gene 45478	1178 bp downstream
Nucb1	nucleobindin 1	790 bp upstream
Rr400313	regulatory region 400313	597 bp downstream
Rr646472	regulatory region 646472	864 bp distal
Rr646473	regulatory region 646473	283 bp distal
Rr646474	regulatory region 646474	119 bp distal
Tssr72423	transcription start site region 72423	819 bp upstream
Tssr72424	transcription start site region 72424	780 bp upstream
Tssr72425	transcription start site region 72425	766 bp upstream
Tulp2	TUB like protein 2	within coordinates