rs48159129 SNP Detail

Summary

• ID
  rs48159129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3555605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCTGTC TCAAAACAAA
  CAAACAAACA AACAAACAAA CAAAAAGTAT ATAAATTAAT GAAATTAAAT AACAAGTTTA
  TAGGACATTC CATGAACATC AATGATTAAA TGTGATATTT AATAATAGAA GTATTAGGTA
  AATGTCAGAA AGTAATGAAA TATCATAAAG TATAATATAG GAAAGTTATG GTATTGTAAA
  Y
  AGTAAATATA TCAAAATTGA ATAAAATACT TTAATAAACA AATATACTGA ACAAAATGTT
  TCAAAGATAA AACTACATAT ATGTGTATGC ATATATATAT TTTATAAGCA GGGTTTTCGA
  TCATGATAGT CTAAATCTTT TTCATTTAGT TTTAGAGACT AGAAAACACA AGGATAAACT
  TCATAAAAAT GCATCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145941514	ENSMUSSNP4538831	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48159129					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3555605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B230117O15Rik	RIKEN cDNA B230117O15 gene			within coordinates
Tmem68	transmembrane protein 68			Intron
				Noncoding-Transcript-Variant