rs48160199 SNP Detail

Summary

• ID
  rs48160199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151253882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTATGC CCAGAATTCC
  AGCACTCAAA AAACAATGCC AACAAACAAG AATTCAAGGC CAGGCTGGGA TAATATTGAA
  ATCCTGTTTC CAAGATAGAA AATAACAAAA CTTTGTCATT TTGGTAGTTT CTTTTTGATC
  AATGAATGAT GAGGTTAGTA TCATACTTTT TATTCACATT ATCTACTTGT AGCTCAAGAG
  R
  TTAAAAAGAA GAAAAAGGCT AGAATGTACC ACTGAAGAGG ATTTAACCAC GAACCCTCAG
  GGAAACAATA AAGACACAGC CTCCGTGCTG CATAAACTAT GCGTGGATAT TCTTATTTAA
  CTAAGTTTAG ATTAACACTA CATTTGGGGG GGGGTTGGTT TTTTTTGTTT TGGTTTGGTT
  TGGTTTTTCA AGACAGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss60818940	NES16490546	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs48160199					SNP	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818940	NES16490546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151253882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420286	regulatory region 420286			593 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant