rs48160539 SNP Detail

Summary

• ID
  rs48160539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45014485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATCGAGG TTCAGAAGTT
  AACTCTGTGT GTTTCTTATG CCTTACAGCT CAGTAAGTTC TATGGCTTCT GTGAAGAGCC
  TGGAGAACAA AGAGAAGATT AATCCAGAGG TGAGAGAAGG GCCTGCCTTC TGAGGGGGAC
  ACGGATGCAC ACACACTTTA GCAGGAGACC CTGGGGAGGT GTAGGGTGGA GACTGCCACT
  Y
  GGGAACTGTG TCTTACCCAT TAGTCTCAGC TCTCAGCTCA TAGGTCATGG CTTTGTGCAC
  AGCAGTGACT TGGGAAGCCT TTACCACTGC CTCTGAGAAA TGGGCTGGGG CAGGGTAGCC
  CGGGCCAGAT CAGCCGTGGG CGGCAGATCC TGGGCGTAGG TACAGGAAAG AGCCCTGACC
  TTGAGATCAG AAAGCTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388971	NES16766743	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48160539					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388971	NES16766743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45014485 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	within coordinates
Tssr84725	transcription start site region 84725	303 bp downstream
Tssr84726	transcription start site region 84726	649 bp upstream
Tssr84727	transcription start site region 84727	679 bp upstream
Tssr84728	transcription start site region 84728	707 bp upstream