rs48160801 SNP Detail

Summary

• ID
  rs48160801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAACCTT TGCTAGATGG
  GAAAGGGCAG ATGCTGCTGA GGTAAAGGGC CTCCAGACTC ACTGAGGAGT TTCTGAAAGA
  CACTATGACT CTTATCTCAG TGTCATATAT TGTTCAGCAT ATAGACTACA GCAAGCAAGC
  CTTCGGAGCT GTTTCCAACA GAGGCACAAT CTCATATGCG TACACTGACC GTCCTGAAGA
  R
  CACCCAAAAC ACTATGCTTA TATTTGAAAA ATGCACAAGG TAAGTGCTAT TCCAAAAATA
  GTTGCCCCAG CAAACTCTAT TGCTTAAAAC TTGCAATTAA GTTTACTGAC AGAAAGCCCA
  GTGTACAGAA TTACATACTA TAGGAACAGC AGAACAAACA GGAGAAGAAG AGAAAAACTA
  GGTCAGAGGT CAGAAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458387	CHEV_10_109339713	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48160801					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738518 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	1082 bp proximal
Tssr99236	transcription start site region 99236	1157 bp downstream
Tssr99237	transcription start site region 99237	1173 bp downstream
Tssr99238	transcription start site region 99238	1195 bp downstream
Tssr99239	transcription start site region 99239	1218 bp downstream
Tssr99240	transcription start site region 99240	1254 bp downstream
Tssr99241	transcription start site region 99241	1295 bp downstream
Tssr99242	transcription start site region 99242	1355 bp downstream