rs48161034 SNP Detail

Summary

• ID
  rs48161034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125925089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAATACA TAAGGAATGT
  ATACATCAAA AGAAGGCGGG GACCAGGCTG CTGCCGAAAA GAAGGGAGCC AGGTGTAAAC
  TGGTCTATTG TTAAACCCAC CACCAGGGGT TCTGCACTAG CAGACCTTTT CAAGAATACT
  GCAATACCCC AACACCCTAT GTCCTGGGTC TACAGAAGAA TTTACCAACT TGCTTCTAAT
  R
  TGAAGCTTGC AATACCTAGC TGTAGAGAAG ATCCCTGTCT CAGTGGGATT CCCTAGCTCT
  AATATGGTAT TCCCTTTTCT ACTGTCCTTA GTAAATATTT TTGCAGACCA GCTCTGAGCT
  ACTGGCTCCG TCTTTTGTAA TGCTTAATTA GTTACTGAAT AGGTAACTTC CTTTCTGCAT
  TCCTGCGGAA TTCCAAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145872505	ENSMUSSNP5485161	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48161034					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125925089 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	125 bp distal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	508 bp distal
Rr153599	regulatory region 153599	1689 bp distal
Rr153600	regulatory region 153600	within coordinates
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	1925 bp downstream
Tssr74630	transcription start site region 74630	985 bp upstream
Tssr74631	transcription start site region 74631	1290 bp downstream