rs48161110 SNP Detail

Summary

• ID
  rs48161110
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117704486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC CTGAAGTGCC CATGCCCAGC
  G
  GGGCTTCGCC GCCGCCCACC CAATC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132898445	ENSMUSSNP5091553	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323869593	CHEV_11_117674974	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48161110					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117704486 () rs orientation: forward

Symbol	Name	Function Class
Gm20708	predicted gene 20708	within coordinates
Rr460820	regulatory region 460820	1649 bp distal
Rr460821	regulatory region 460821	253 bp proximal
Rr460822	regulatory region 460822	1229 bp proximal
Syngr2	synaptogyrin 2	within coordinates
Tk1	thymidine kinase 1	1866 bp downstream
Tssr106080	transcription start site region 106080	357 bp downstream
Tssr106081	transcription start site region 106081	239 bp downstream
Tssr106082	transcription start site region 106082	196 bp downstream
Tssr106083	transcription start site region 106083	within coordinates
Tssr106084	transcription start site region 106084	41 bp upstream
Tssr106085	transcription start site region 106085	95 bp upstream
Tssr106086	transcription start site region 106086	155 bp upstream
Tssr112040	transcription start site region 112040	223 bp upstream
Tssr112041	transcription start site region 112041	194 bp upstream
Tssr112042	transcription start site region 112042	165 bp upstream
Tssr112043	transcription start site region 112043	63 bp downstream