rs48161852 SNP Detail

Summary

• ID
  rs48161852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCGGT CTCAAACTCA
  AAGATAGCTG TATGCTGCTT GAGTGCTGGG ATCAAAGGCA TGGACCACCA AGCCTGGCCT
  AGCAAACTAG TTTAATCACG GTTCTTTCAC CAAGCCGATC ATGGGCAACT TTAAAGCAAG
  AAGAAAAAGA TGCAGCATAC TATTCATTAA AAGGAAAATA ATTTTCTGGG TTGATGGTAT
  R
  TGCCTTTAAT CCCAGCAGTC TGGAGGCAGA AGGAGGGTCC ATATAGCAAA ATCCAGGTGA
  GCCAGGGCTG CATAGTGAGA TCCTGTCGTA TTTTTAAATT ATTGCTTCAT TTTTATCACA
  TCTTTAACAT TTTAAGTGTG CTATGTAATG TATATTAGCA GTCATGTGAG TATCATTGAT
  AAATATGTAG ATTGCAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647310	ENSMUSSNP4111260	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss322398765	CHEV_7_117910888	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48161852					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366581 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	832 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	709 bp proximal
Rr653308	regulatory region 653308	419 bp proximal
Rr653309	regulatory region 653309	1047 bp proximal
Rr653310	regulatory region 653310	1548 bp proximal
Tssr68503	transcription start site region 68503	689 bp upstream
Tssr68504	transcription start site region 68504	732 bp upstream
Tssr68505	transcription start site region 68505	764 bp upstream
Tssr68506	transcription start site region 68506	795 bp upstream
Tssr68507	transcription start site region 68507	1241 bp upstream
Tssr68508	transcription start site region 68508	1456 bp upstream
Tssr74265	transcription start site region 74265	1927 bp downstream