rs48161892 SNP Detail

Summary

• ID
  rs48161892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25953674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGTGCT CCCATTCAGG
  AGTGTCTATG TGTGGTGACA TTTTAGTAGA ACAAGGTCTT AATATAATGC CAGTTTAACA
  CACAATCCAT CATTTGAGTG TATTTTGTAT TCTTAATTGT TTTTTCCTAC GGCAATTGTG
  GGATTGGAAC GGAAAGACAA TTCAGTATCA TCAAATTACA AGTTGAGAGG CTGTATTAAG
  R
  CACTGCTTGA AGTGAAACAC TTCTCTCACA GAAAACTAAA ATGGATTTTA CAAGGAGTTT
  TTAACATTCA CTAAGCATCC TAATTAACCT TTGTCAGGTA GAATTAAAGC AACCAAGAAG
  TTTAACAGAA TCCAAAGACA TGCAGTTGGC GGTGGCATTT TCATCCCAAG TCTCCAGCAG
  AGGGTTTGTT ATTTTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60978858	NES16140095	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48161892					SNP	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60978858	NES16140095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25953674 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r-ps86	vomeronasal 1 receptor, pseudogene 86	831 bp upstream