rs48162113 SNP Detail

Summary

• ID
  rs48162113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75369778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG CAACTACCAT GCCAGACCCA
  R
  GGCAGTTTAA TATGTAACCT CAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139749556	ENSMUSSNP3215107	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss324673217	CHEV_14_75532145	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48162113					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75369778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	1546 bp distal
Cpgi6737	CpG island 6737	1078 bp distal
Gm62951	predicted gene, 62951	1717 bp upstream
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Lrrc63	leucine rich repeat containing 63	1457 bp upstream
Rr297500	regulatory region 297500	177 bp distal
Tssr4477	transcription start site region 4477	1704 bp upstream
Tssr126606	transcription start site region 126606	1188 bp downstream
Tssr126607	transcription start site region 126607	1097 bp downstream
Tssr126608	transcription start site region 126608	1060 bp downstream
Tssr126609	transcription start site region 126609	775 bp downstream
Tssr126610	transcription start site region 126610	731 bp downstream
Tssr126611	transcription start site region 126611	300 bp downstream
Tssr126612	transcription start site region 126612	284 bp downstream
Tssr129761	transcription start site region 129761	1733 bp upstream
Tssr129762	transcription start site region 129762	1716 bp upstream
Tssr129763	transcription start site region 129763	1689 bp upstream
Tssr129764	transcription start site region 129764	1395 bp upstream
Tssr129765	transcription start site region 129765	1292 bp upstream
Tssr129766	transcription start site region 129766	756 bp upstream
Tssr129767	transcription start site region 129767	704 bp upstream