rs48162120 SNP Detail

Summary

• ID
  rs48162120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67011934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCAGGTG CACCTGTGTG CGACTCACCT TTGCTGCCCC
  TGTGGGACAC ACAGTAGGTG TGGCTATCTA TGTGGTCTTA CTCAATGGTC ATCTCTGGGA
  Y
  GGGTGTGACC ATCAGATGAG GCCCCTGGCA GGGGAGCCCA TGGTGGAGAA GCCTGCCCAA
  CGCCATGTGG TCAAAAGAGG AGTGGGAGCT TCAGTCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136577306	ENSMUSSNP6955882	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322989570	CHEV_9_66952459	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48162120					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67011934 () rs orientation: forward

Symbol	Name	Function Class
Gm10646	predicted gene 10646	within coordinates
Gm22145	predicted gene, 22145	297 bp downstream
Rr681876	regulatory region 681876	1228 bp proximal