rs48163079 SNP Detail

Summary

• ID
  rs48163079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84852571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAAAGA ACTCAAGCAC
  CCTCCACTCC TACTCAAGGT GACCCTCTAG CTAAGAGCAC AGCCCTAGAG AGGGCAGGCG
  AGAGAGCACA CATGTGCGCG GAGAGCAACG GCAACAATAC CATACAGTAG TAGCCTTGCT
  TCTCCTGCCT CAGACAATGA GCCTTTGTGG AAGGCACATT CCATAGCCAG GTGTGTTTGC
  Y
  AGGGATCTCC CTCACACCGC TGCCCTTCAT CGCTATGGCT GACTAGAGGG AGTCAGATAC
  CAGCTCTGGA CACTTAAGAC AACCTTGTGC AATATAACTC TGTCCCTTCC CCATGGGCAG
  GTGGAGCACT GCCAGGGTCC TCAGTGATTC AACCCCCTCT CACCTCGCCT CCTACTCTAT
  GAACTCCCCA TTCTTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61660009	NES17614300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48163079					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61660009	NES17614300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84852571 () rs orientation: forward

Symbol	Name	Function Class
Ltbp2	latent transforming growth factor beta binding protein 2	within coordinates
Rr469728	regulatory region 469728	1907 bp distal
Rr469729	regulatory region 469729	within coordinates
Rr469730	regulatory region 469730	865 bp proximal
Tssr114362	transcription start site region 114362	1228 bp upstream
Tssr114363	transcription start site region 114363	1255 bp upstream
Tssr114364	transcription start site region 114364	1281 bp upstream