rs48163358 SNP Detail

Summary

• ID
  rs48163358
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14067688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTGGGT GGTGGTTTGG
  CTCCCTTAAC TAACTCCTCA GTCTACAGTT TATAAACTTG GTGCAGCTGT TTTCCATATT
  TGCAGGTAAT TTGAGGATTT AATTGTAAAG GTTATAAAGA CTTTAAAAAG TTTCCTTAAC
  TCAGCTAAGA AACTAAAAGT GCAATGTTAC TTTAGTTAAA TGGTTTGGTG ACTTAAAAAA
  W
  TTTTTTTGGC AGTATAATTT GAGGGTAACT GAGATGGTCT CTTAATACTT TCTGAGTTAT
  TTTTAAAAGC CAAAAGTTTT CCACAAATTT TTCTTTCACA TTTGAGTGAC TAGCACAGTA
  GGATTCTGAT GGTCTTATTT AAGCTAAAGA ATAGATAAAA AGAAAGACCA TTTTATCTGG
  ATACTTTGTT ATTTCTGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543073	NES16555060	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48163358					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543073	NES16555060	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14067688 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	1333 bp downstream
Tssr142715	transcription start site region 142715	1307 bp downstream
Tssr142716	transcription start site region 142716	1266 bp downstream
Tssr142717	transcription start site region 142717	1243 bp downstream
Tssr142718	transcription start site region 142718	1230 bp downstream
Tssr142719	transcription start site region 142719	660 bp downstream