rs48163516 SNP Detail

Summary

• ID
  rs48163516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100306978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATCTGT AATGGGATCC
  GATGCCCTCT TCTGGTGTGT CTGAAGACAG CTACAGTGTA CTTACATATA ATAAATAAAT
  AAATAAATCC TTTTTTAAAA AAAGGAGAGA GAGAGAGAGC AAGAGAAGGG GGACGTGAGA
  GCTTAATGAA TGCTCAAAAG GACAGGGAGA GCCCAGCAAG GGCCTGACAA GGAGAGCCCA
  R
  CAAGCATCCA AGATAGCCCA CGAAGTCCAA GAGTCCATCC ACAGCAGTAA CAATAACAAC
  AATGAAAATT TGTTTTTCAG CCAGGGTAAA ACTGTAGCTC ACCTTAAATC CAGCCACTGC
  TCCAGACTGC AAATCAGATT CGATGTTTCC TGGGTCTAGG TAGGCAATGC TCATAAGAAA
  GCCAGGCCCC GTGAACGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148475043	ENSMUSSNP4531601	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss325083091	CHEV_15_100239528	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48163516					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100306978 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1513 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	1062 bp downstream