rs48163867 SNP Detail

Summary

• ID
  rs48163867
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3400206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG CCAAACAAAT GAAAGACCCA
  T
  CTGAGAAGAA CTTCAAGTCT TTGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132926248	ENSMUSSNP538053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48163867					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3400206 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	206 bp distal
Rr146113	regulatory region 146113	605 bp distal
Rr146114	regulatory region 146114	206 bp distal
Rr399551	regulatory region 399551	512 bp downstream
Samd9l	sterile alpha motif domain containing 9-like	748 bp upstream
Tssr59689	transcription start site region 59689	891 bp upstream
Tssr59690	transcription start site region 59690	742 bp upstream
Tssr59691	transcription start site region 59691	632 bp upstream