rs48164440 SNP Detail

Summary

• ID
  rs48164440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25207370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACTTTA GGATCTGTTG
  TTTCAGCTTT CAGAGTTAAG TTATATGAAG AGAAATAATC TTCACTTTAA ATAAATGACC
  AAAAACTATT GTATAGTAGA AACCAGCTGA ATAAATACCA TTGTAAAATA TTCTGTCATT
  ATTTTGAATT CATTTCGGGA CAACACCCAT ATGATTCACA CTTCTGAAAT AATTGAATTT
  R
  AAATATTTTA ACTTTCATTC CACTCTCTGT CTGTGTGCAT ATGGGTTAAG GAAGGGAGGG
  AGGCGCATGC CCTGTCATCC TTGTGGAGAT CGGAGAAGAG TTTTGTAGAA TCGGTTCTCT
  TTCTGCTTTT TCTTTTTCTA CTTTGCATGG TAGGCACCTT TACTTTCTTT GTTCCCCTGT
  AATAGGTTTT TGTATTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136234434	ENSMUSSNP3304946	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48164440					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25207370 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1728 bp upstream
Tssr84137	transcription start site region 84137	1753 bp upstream
Tssr84138	transcription start site region 84138	1801 bp upstream