rs48164610 SNP Detail

Summary

• ID
  rs48164610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115062689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCTTT GCAAGAGTAG
  TACATTCTCT TAGCCACTGA GCTGTGTCTC CAGTCCTCAG CCCTGGTTTA AATACACCGA
  GAAAGCCCCA GATCAGCACC ACTTAGGGGC TGTTCTCAGT TCTATGAAAG CAAATGTTTG
  AGTCTCGTGT TTAGGGCCAA CCCAAGCAGG ACAATTGAGA TGCCATCTCT ATCAACAGTC
  Y
  TGGAAGAACT GTAAGCCTGG ACAAAAAGAA CAGATTCCTA GAAACACATC CTACTAAGAA
  TGAGTCATGA ACTAAGAAAT TAGAATAGAT CTATAAATAG CAAGGAGATT GGACCAGTCA
  CTTAAAATTT CCCAACCAAA AAAAAAAAAA AAAAAAAAAA ATGCCAGGAC CAGATGGCCT
  TAGATGAATC CTACCAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61227444	NES16843190	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	C	C	C	C	C	C	C	T
ss137004655	ENSMUSSNP2040114	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48164610					SNP	T	T	T	C	T	T	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227444	NES16843190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115062689 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	within coordinates
Osbpl10	oxysterol binding protein-like 10	1396 bp downstream