rs48164812 SNP Detail

Summary

• ID
  rs48164812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126934704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG AATGTAAAAT CATTGGTTGG
  Y
  GCTTAATGTA TTGCGAATGC CTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145879610	ENSMUSSNP163350	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322451453	CHEV_7_134479046	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48164812					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126934704 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	394 bp downstream
Tssr69201	transcription start site region 69201	1951 bp downstream
Tssr69202	transcription start site region 69202	1907 bp downstream
Tssr69203	transcription start site region 69203	1865 bp downstream
Tssr69204	transcription start site region 69204	1697 bp downstream
Tssr69205	transcription start site region 69205	784 bp downstream
Tssr74988	transcription start site region 74988	393 bp upstream