rs48164933 SNP Detail

Summary

• ID
  rs48164933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182093794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAATCGTGG TCTCGCTGGT
  CCTTGAGAGG GTCTCCTCAG ATTGATTGAC TACCCACGTC GGGGGTCTTT CATTTGTTCA
  ACAAATATTT ATTGACTGGC AGCTGAACTA CTTGGTGGCA ACAGAGCTAC GCACCCAAGC
  ACAGCTCTTC TCTAATGGCC GTTCTTCCTG GGGGAGGGAA GATAAGATAA GAATGAATGT
  R
  TGTGTAGCTA CTTGTGAAGC AATGCAAGTG TAACTACCGG CATGCACTGT GAAGAAGGCA
  TGGAGAAGCT GGGTGTGCTG GAGGTGAGGG TGGCCATTCA GGTCATTCAG AGGTCGGTCA
  GGATGGATAA AGTGGTGTCT AGAGGAAGTG AGTTATCACT TCTGGTGGGG AAAGAGTGTT
  CAAGGTTAGC CTGGGCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352054	NES15855448	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48164933					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352054	NES15855448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182093794 () rs orientation: forward

Symbol	Name	Function Class
Gm33887	predicted gene, 33887	197 bp downstream
Rr424897	regulatory region 424897	1877 bp proximal