rs48165189 SNP Detail

Summary

• ID
  rs48165189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148781471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCCGCA TTTGCATGCA
  AACTCTCATG CTGGGTAATT ATACACAGAG CTGGCACTCA AATTAATTAA AGCTGATTTC
  TCTGTGACTG CAAACTGGTC CTATTCTCTG CCCCCCCCCA CTCCCTCCTG CTCATCCTCC
  TATGAAGTCA TCTATCTACA CTCAGTGTGA CACTTCTGTC TCTGGTATTC TCAAGAACGG
  Y
  AATGTTTGAC AATTGTGAAG CCGGCAATAT TTTGGAGAGC AGCTGACAAT GGCTCGGTGG
  TATTATGCTT CGCCCAAACC CTTTATGGTA TAAAGATAAA GAACAGCTTC TAGGCATTTG
  CTTTGTAATT ATCTGAAATA ATAACATGGA CAAATTATAT ATATTGTTCC TGTGGGTTCC
  CTCCCCTCTT GAATGGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61098104	NES16608720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		T	C	C	T		C
ss321017231	CHEV_3_148738799	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48165189					SNP	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098104	NES16608720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148781471 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	within coordinates
Rr587253	regulatory region 587253	1226 bp proximal
Tssr36091	transcription start site region 36091	1254 bp downstream
Tssr36092	transcription start site region 36092	1279 bp downstream
Tssr36093	transcription start site region 36093	1316 bp downstream
Tssr36094	transcription start site region 36094	1344 bp downstream
Tssr36095	transcription start site region 36095	1401 bp downstream
Tssr36096	transcription start site region 36096	1506 bp downstream